Design and Development of Bioinformatics Feature Based DNA Sequence Data Compression Algorithm
نویسندگان
چکیده
منابع مشابه
Development and Implementation of Novel Data Compression Technique for Accelerate DNA Sequence Alignment Based on Smith–Waterman Algorithm
Abstract— This paper presents the development and implementation of high performance accelerating and optimization technique for DNA sequences alignment algorithm. The scope of the paper focuses on speed optimization and memory reduction of the existing algorithm on initialization module. The novel development and implementation of the optimization using data compression technique for accelerat...
متن کاملSbvrldnacomp:an Effective Dna Sequence Compression Algorithm
There are plenty specific types of data which are needed to compress for easy storage and to reduce overall retrieval times. Moreover, compressed sequence can be used to understand similarities between biological sequences. DNA data compression challenge has become a major task for many researchers for the last few years as a result of exponential increase of produced sequences in gene database...
متن کاملDNA Data Compression Based on the Whole Genome Sequence
In order to cope with the rapidly growing genome sequence data, we need a new method for compression. The compression ratios of existing algorithms are just about 1.6 bits per base. Furthermore, it is impossible to compare DNA sequences in their compressed or encoded form. Provided that an anchor point called the whole genome sequence for each organism has been setup in the post genome era, thi...
متن کاملHigh-throughput DNA sequence data compression
The exponential growth of high-throughput DNA sequence data has posed great challenges to genomic data storage, retrieval and transmission. Compression is a critical tool to address these challenges, where many methods have been developed to reduce the storage size of the genomes and sequencing data (reads, quality scores and metadata). However, genomic data are being generated faster than they...
متن کاملPhylogeny of Onobrychis sect. Hymenobrychis (Fabaceae) based on chloroplast DNA sequence data
Phenetic analysis of morphological characters in different species of Onobrychis Miller sect. Hymenobrychis DC. (Fabaceae), classified them in two main groups based on corolla features. To determine the phylogenetic relationships among the 13 species, chloroplast DNA sequences were used. Analysis of these data resulted in a well-resolved and well-supported phylogeny. Phylogenies generated by ma...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
ژورنال
عنوان ژورنال: EAI Endorsed Transactions on Pervasive Health and Technology
سال: 2020
ISSN: 2411-7145
DOI: 10.4108/eai.13-7-2018.164097